API for ykong2/MADSEQ
Mosaic Aneuploidy Detection and Quantification using Massive Parallel Sequencing Data
| Global functions | |
|---|---|
| HDIofMCMC | Source code |
| MADSEQ-package | Man page |
| MadSeq | Man page |
| MadSeq-class | Man page |
| aneuploidy_chr18 | Man page |
| calculateGC | Source code |
| calculateNormedCoverage | Source code |
| calculateSubCoverage | Source code |
| calculate_BIC | Source code |
| correctGCBias | Source code |
| coverageQuantile | Source code |
| creatDataList_Four | Source code |
| creatDataList_LOH | Source code |
| creatDataList_One | Source code |
| creatDataList_Two | Source code |
| deltaBIC | Man page |
| deltaBIC,MadSeq-method | Man page |
| filter_hetero | Source code |
| getCoverage | Source code |
| isHetero | Source code |
| log_likelihood_UPD | Source code |
| log_likelihood_four | Source code |
| log_likelihood_one | Source code |
| log_likelihood_two | Source code |
| normalizeCoverage | Man page Source code |
| plotFraction | Man page |
| plotFraction,MadSeq-method | Man page |
| plotMadSeq | Man page |
| plotMadSeq,MadSeq-method | Man page |
| plotMixture | Man page |
| plotMixture,MadSeq-method | Man page |
| plotSites | Source code |
| posterior | Man page |
| posterior,MadSeq-method | Man page |
| prepareCoverageGC | Man page Source code |
| prepareHetero | Man page Source code |
| removeAQP | Source code |
| removeGap | Source code |
| removeHLA | Source code |
| removeRE | Source code |
| runLOH | Source code |
| runMadSeq | Man page Source code |
| runMeioticTrisomy | Source code |
| runMitoticTrisomy | Source code |
| runMonosomy | Source code |
| runNormal | Source code |
| summary | Man page |
| summary,MadSeq-method | Man page |
