Files in ykong2/MADSEQ
Mosaic Aneuploidy Detection and Quantification using Massive Parallel Sequencing Data

.DS_Store
.Rbuildignore
.Rhistory
.gitignore
DESCRIPTION
MADSEQ.Rproj
NAMESPACE
R/.Rhistory
R/AllClasses.R R/AllGenerics.R R/MADSEQ.R R/MadSeqMethod.R R/PlotHelper.R R/PlotShow.R R/PreProcessingHelper.R R/PreProcessingShow.R R/RunModelHelper.R R/RunModelShow.R R/data.R README.md
data/aneuploidy_chr18.RData
inst/AQP7/hg19_AQP7_gr.RDS
inst/AQP7/hg38_AQP7_gr.RDS
inst/AQP7/hs37d5_AQP7_gr.RDS
inst/HLA/hg19_HLA_gr.RDS
inst/HLA/hg38_HLA_gr.RDS
inst/HLA/hs37d5_HLA_gr.RDS
inst/NEWS
inst/extdata/aneuploidy.bam
inst/extdata/aneuploidy.bam.bai
inst/extdata/aneuploidy.vcf.gz
inst/extdata/aneuploidy.vcf.gz.tbi
inst/extdata/aneuploidy.vcf1.gz
inst/extdata/normal.bam
inst/extdata/normal.bam.bai
inst/extdata/normal.vcf.gz
inst/extdata/target.bed
inst/gap/hg19_gap_gr.RDS
inst/gap/hg38_gap_gr.RDS
inst/gap/hs37d5_gap_gr.RDS
inst/rjags/FourMix.txt
inst/rjags/LOH.txt
inst/rjags/OneMix.txt
inst/rjags/TwoMixMonosomy.txt
inst/rjags/TwoMixTrisomy.txt
man/MADSEQ-package.Rd man/MadSeq.Rd man/aneuploidy_chr18.Rd man/deltaBIC.Rd man/normalizeCoverage.Rd man/plotFraction.Rd man/plotMadSeq.Rd man/plotMixture.Rd man/posterior.Rd man/prepareCoverageGC.Rd man/prepareHetero.Rd man/runMadSeq.Rd man/summary-method.Rd vignettes/MADSEQ-vignette.Rmd
vignettes/MADSEQ-vignette.html
vignettes/aneuploidy.vcf.gz_filtered_heterozygous.txt
vignettes/aneuploidy_cov_normed_depth.txt
vignettes/normal_cov_normed_depth.txt
ykong2/MADSEQ documentation built on May 3, 2018, 10:18 p.m.