Man pages for ykong2/MADSEQ
Mosaic Aneuploidy Detection and Quantification using Massive Parallel Sequencing Data
| aneuploidy_chr18 | An S4 class MadSeq object |
| deltaBIC | Accessing delta BIC of MadSeq object |
| MadSeq | The MadSeq class |
| MADSEQ-package | Mosaic Aneuploidy Detection using Massive Parallel Sequencing... |
| normalizeCoverage | correct coverage bias due to GC content |
| plotFraction | histgram for the fraction of aneuploid cells estimated by... |
| plotMadSeq | density plot for posterior distribution of selected model |
| plotMixture | density plot for the posterior distribution of alternative... |
| posterior | Accessing posterior distribution of MadSeq object |
| prepareCoverageGC | get sequencing coverage and GC content for targeted regions |
| prepareHetero | prepare heterozygous sites for aneuploidy detection |
| runMadSeq | Model to detect and quantify mosaic aneuploidy |
| summary-method | Summarize statistics of the MadSeq object |
