Files in ykong2/MADSEQ
Mosaic Aneuploidy Detection and Quantification using Massive Parallel Sequencing Data
.DS_Store
.Rbuildignore
.Rhistory
.gitignore
DESCRIPTION
MADSEQ.Rproj
NAMESPACE
R/.Rhistory
R/AllClasses.R
R/AllGenerics.R
R/MADSEQ.R
R/MadSeqMethod.R
R/PlotHelper.R
R/PlotShow.R
R/PreProcessingHelper.R
R/PreProcessingShow.R
R/RunModelHelper.R
R/RunModelShow.R
R/data.R
README.md
data/aneuploidy_chr18.RData
inst/AQP7/hg19_AQP7_gr.RDS
inst/AQP7/hg38_AQP7_gr.RDS
inst/AQP7/hs37d5_AQP7_gr.RDS
inst/HLA/hg19_HLA_gr.RDS
inst/HLA/hg38_HLA_gr.RDS
inst/HLA/hs37d5_HLA_gr.RDS
inst/NEWS
inst/extdata/aneuploidy.bam
inst/extdata/aneuploidy.bam.bai
inst/extdata/aneuploidy.vcf.gz
inst/extdata/aneuploidy.vcf.gz.tbi
inst/extdata/aneuploidy.vcf1.gz
inst/extdata/normal.bam
inst/extdata/normal.bam.bai
inst/extdata/normal.vcf.gz
inst/extdata/target.bed
inst/gap/hg19_gap_gr.RDS
inst/gap/hg38_gap_gr.RDS
inst/gap/hs37d5_gap_gr.RDS
inst/rjags/FourMix.txt
inst/rjags/LOH.txt
inst/rjags/OneMix.txt
inst/rjags/TwoMixMonosomy.txt
inst/rjags/TwoMixTrisomy.txt
man/MADSEQ-package.Rd
man/MadSeq.Rd
man/aneuploidy_chr18.Rd
man/deltaBIC.Rd
man/normalizeCoverage.Rd
man/plotFraction.Rd
man/plotMadSeq.Rd
man/plotMixture.Rd
man/posterior.Rd
man/prepareCoverageGC.Rd
man/prepareHetero.Rd
man/runMadSeq.Rd
man/summary-method.Rd
vignettes/MADSEQ-vignette.Rmd
vignettes/MADSEQ-vignette.html
vignettes/aneuploidy.vcf.gz_filtered_heterozygous.txt
vignettes/aneuploidy_cov_normed_depth.txt
vignettes/normal_cov_normed_depth.txt
