loadPkSetIterative: loadPkSetIterative

In ypriverol/pIR: pIR: Estimating Isoelectric Point (pI) of Peptide and Proteins from Amino Acid Sequence.

Description

This function retrieve a pk dataset using the name of the pKSet

• sillero : Sillero, A., Maldonado, A. (2006) Isoelectric point determination of proteins and other macromolecules: oscillating method. Comput Biol Med., 36:157-166.

• rodwell : Rodwell, J. Heterogeneity of component bands in isoelectric focusing patterns. Analytical Biochemistry, 1982, 119 (2), 440-449.

• solomon : Solomon, T.W.G. (1998) Fundamentals of Organic Chemistry, 5th edition. Published by Wiley.

• emboss : EMBOSS data are from http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/iep.html.

• lehninger : Nelson, David L., Albert L. Lehninger, and Michael M. Cox. Lehninger principles of biochemistry. Macmillan, 2008.

• patrickios : Patrickios, Costas S., and Edna N. Yamasaki. "Polypeptide amino acid composition and isoelectric point ii. comparison between experiment and theory." Analytical biochemistry 231.1 (1995): 82-91.

• grimsley : Gerald R Grimsley, J Martin Scholtz and C Nick Pace. A summary of the measured pK values of the ionizable groups in folded proteins. Protein Sci. 2009 Jan; 18(1): 247<e2><80><93>251.

• wikipedia : http://en.wikipedia.org/wiki/List_of_standard_amino_acids

• DtaSelect : http://fields.scripps.edu/DTASelect/20010710-pI-Algorithm.pdf

• toseland : Toseland, C.P., et al. (2006). "PPD v1.0–an integrated, web-accessible database of experimentally determined protein pKa values." Nucleic Acids Res 34(Database issue): D199-203.

• thurlkill : Thurlkill, R.L., et al. (2006). "pK values of the ionizable groups of proteins." Protein Sci 15(5): 1214-1218.

• nozaki_tanford : Nozaki, Y., and C. Tanford. 1967. J. Am. Chem. Soc. 89:736<e2><80><93>742.

Usage

loadPkSetIterative(pkSetMethod = "solomon")

Arguments

pkSetMethod

name of the pk

ypriverol/pIR documentation built on May 4, 2019, 5:33 p.m.