proteins: Isoelectric poit of a set of proteins from PID-DB

In ypriverol/pIR: pIR: Estimating Isoelectric Point (pI) of Peptide and Proteins from Amino Acid Sequence.

Description

This dataset contains more than 1000 proteins with the experimental isoelectric point and the predicted pI using different methods. The variables are as follows:

Usage

data(proteins)

Arguments

pepFile	the peptide file
protFile	the protein file
cols	number of columns by chart

Format

A data frame with 1041 rows and 19 variables pIBenchmark

This function get the original file with peptides and proteins and do the complete benchmark. At the end it generates a file with all the comparison

Details

• PROTEIN. The potein accession

• EXPERIMENTAL. The experimental isoelectric point

• COFACTOR. The isoelectric point using the method developed by Cargile and co-workers.

• ITERATIVE_THURLKILL

• ITERATIVE_TOSELAND

• ITERATIVE_GRIMSLEY

• ITERATIVE_SOLOMON

• ITERATIVE_EMBOSS

• ITERATIVE_LEHNINGER

• ITERATIVE_PATRICKIOS

• ITERATIVE_RICHARD

• ITERATIVE_RODWELL

• ITERATIVE_SILLERO

• BRANCA

• BJELL_DEFAULT

• BJELL_SKOOG

• BJELL_CALLIBRATED

• BJELL_EXPASY

• SVM

ypriverol/pIR documentation built on May 4, 2019, 5:33 p.m.