API for yuanqingyan/singleGEO
Query and Analysis of High-throughput Single Cell Sequencing Data from GEO
| Global functions | |
|---|---|
| CheckFolderExist | Source code |
| CheckNormMethodForNormData | Source code |
| CheckRowName | Source code |
| CheckUniqueClusterNumber | Source code |
| Dat_GSE54_GSE48 | Man page |
| Data_Query_transfer | Man page |
| Data_Ref_transfer | Man page |
| ExtractFile | Man page Source code |
| GetGeoMetaDatabase | Man page Source code |
| Get_GSMFromGSE | Man page Source code |
| Get_Geo_Data | Man page Source code |
| Get_Keyword_Meta | Man page Source code |
| MakeSeuObj_FromNormalizedRNAData | Man page Source code |
| MakeSeuObj_FromRawRNAData | Man page Source code |
| Norm_GSE134174 | Man page |
| Obtain_GSM_fromGSE | Source code |
| SelectObjWithTopNumCluster | Source code |
| SeuObj_integration | Man page Source code |
| SeuObj_transfer | Man page Source code |
| Seurat_dimensionReduc | Source code |
| Seurat_normalization | Source code |
| Splitdata_MakeDataList | Man page Source code |
| Try_Filter_ATACseq | Source code |
| Try_Filter_RNAseq | Source code |
| Try_Filter_SingleCell | Source code |
| Try_Filter_organism | Source code |
| Try_Filter_scATACseq | Source code |
| Try_Filter_scRNAseq | Source code |
| Try_Filter_sequencing | Source code |
| Try_Filter_userKW | Source code |
| Try_GetPlatform | Source code |
| Try_gse_search_item | Source code |
| checkObj2_forInt | Source code |
| checkRefIndex | Source code |
| check_KW_list | Source code |
| collapse_keywork | Source code |
| downloadGSESupplFile | Source code |
| extractAll | Source code |
| extractGZ | Source code |
| extractTar | Source code |
| extractZip | Source code |
| isEmptyFile | Source code |
| join_gse_gsm | Source code |
| keyword_ATACseq_search | Source code |
| keyword_RNAseq_search | Source code |
| keyword_singlecell_search | Source code |
| listDat_GSE123405_data | Man page |
| listDat_GSE134174 | Man page |
| removeFolder | Source code |
| select_OutGSES_item | Source code |
| select_OutGSM_item | Source code |
| singleGEOgetSQLiteFile | Source code |
| testData_GSE134174 | Man page |
| testNormData_GSE134174 | Man page |
