GetGeoMetaDatabase: GetGeoMetaDatabase

In yuanqingyan/singleGEO: Query and Analysis of High-throughput Single Cell Sequencing Data from GEO

GetGeoMetaDatabase

Description

Download and connect to a SQLite database file

Usage

GetGeoMetaDatabase(Sqlfile = NULL, Demo = FALSE)

Arguments

Sqlfile

Using existing GEO meta database or downloading the new one. If "GEOmetadb.sqlite" file has been downloaded but it is not in current folder, the path of the file should be provided. If file of "GEOmetadb.sqlite" can be detected under current folder, the program will use the file. If no "GEOmetadb.sqlite"" file is detected, the program will download the new one and save it in current folder. Optional. Default: NULL(check file under current folder or automatically download the new one)

Demo

Whether to use Demo database or not. Default: FALSE

Value

The meta database

Examples

library(singleGEO)
GeoDataBase<-GetGeoMetaDatabase(Sqlfile=NULL,Demo=TRUE)

yuanqingyan/singleGEO documentation built on Jan. 11, 2025, 6:35 p.m.