API for yue-wang-biomath/RgnTX
Colocalization analysis of transcriptome elements in the presence of isoform heterogeneity and ambiguity
| Global functions | |
|---|---|
| GRanges2GRangesList | Man page Source code |
| GRangesList2GRanges | Man page Source code |
| adjustGroup | Source code |
| adjustMultipleTesting | Man page Source code |
| calculateShift | Man page Source code |
| distanceTx | Man page Source code |
| extractRegions | Man page Source code |
| getFormatCorrect | Man page Source code |
| getPermSpaceByFeatures | Man page Source code |
| getPermSpaceByTxID | Man page Source code |
| getPermSpaceByType | Man page Source code |
| getPvalZscore | Man page Source code |
| getStopCodon | Man page Source code |
| getTransInfo | Man page Source code |
| overlapCountsTx | Man page Source code |
| overlapCountsTxIA | Man page Source code |
| overlapWidthTx | Man page Source code |
| permTestTx | Man page Source code |
| permTestTxIA | Man page Source code |
| permTestTxIA_customPick | Man page Source code |
| permTestTx_customAll | Man page Source code |
| permTestTx_customPick | Man page Source code |
| plotPermResults | Man page Source code |
| plotShiftedZScoreTx | Man page Source code |
| randomizeFeaturesTx | Man page Source code |
| randomizeFeaturesTxIA | Man page Source code |
| randomizeTransByOrder | Man page Source code |
| randomizeTx | Man page Source code |
| shiftExonTx | Man page Source code |
| shiftTx | Man page Source code |
| shiftedZScoreTx | Man page Source code |
| vector2GRangesList | Man page Source code |
