getPermSpaceByType: Get permutation space by specifying type
In yue-wang-biomath/RgnTX: Colocalization analysis of transcriptome elements in the presence of isoform heterogeneity and ambiguity
getPermSpaceByType R Documentation
Get permutation space by specifying type
Description
This function can return 5'UTR/CDS/3'UTR/mRNA/full part of transcriptome regions, following the format required by the main permutation test functions.
Usage
getPermSpaceByType(txdb, type = "mature")
Arguments
txdb
A TxDb object.
type
A character object. Default is "mature". It accepts options "mature", "full", "fiveUTR", "CDS" or "threeUTR", with which one can get corresponding types of transcriptome regions.
Value
A GRangesList object.
See Also
getPermSpaceByTxID, getPermSpaceByFeatures
yue-wang-biomath/RgnTX documentation built on Aug. 24, 2023, 1:12 p.m.
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| getPermSpaceByType | R Documentation |
Get permutation space by specifying type
Description
This function can return 5'UTR/CDS/3'UTR/mRNA/full part of transcriptome regions, following the format required by the main permutation test functions.
Usage
getPermSpaceByType(txdb, type = "mature")
Arguments
txdb |
A TxDb object. |
type |
A character object. Default is "mature". It accepts options "mature", "full", "fiveUTR", "CDS" or "threeUTR", with which one can get corresponding types of transcriptome regions. |
Value
A GRangesList object.
See Also
getPermSpaceByTxID, getPermSpaceByFeatures
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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