overlapWidthTx: Evaluation function

In yue-wang-biomath/RgnTX: Colocalization analysis of transcriptome elements in the presence of isoform heterogeneity and ambiguity

Evaluation function

Description

Evaluation function. This function returns the sum of widths of each overlap between two region sets, i.e., the total number of overlapping nucleotides between two input region sets.

Usage

overlapWidthTx(A, B, ...)

Arguments

A	Region set 1. A Granges or GRangesList object.
B	Region set 2. A Granges or GRangesList object.
...	Any additional parameters needed.

Value

A numeric object.

See Also

overlapCountsTx, distanceTx

Examples

library(TxDb.Hsapiens.UCSC.hg19.knownGene)
txdb <- TxDb.Hsapiens.UCSC.hg19.knownGene
trans.ids <- c("170", "782", "974", "1364", "1387")
A <- randomizeTx(
    txdb, trans.ids, random_num = 20,
    random.length = 100
)
B <- randomizeTx(
    txdb, trans.ids = trans.ids, random_num = 20,
    random_length = 100
)

overlapWidthTx(A, B)

yue-wang-biomath/RgnTX documentation built on Aug. 24, 2023, 1:12 p.m.