plotPermResults: Plot permutation test results

In yue-wang-biomath/RgnTX: Colocalization analysis of transcriptome elements in the presence of isoform heterogeneity and ambiguity

Plot permutation test results

Description

Show a graphical representation of permutation test.

Usage

plotPermResults(permTestTx_results = NULL, breaks = 15, alpha = 0.05,
test_type = "one-sided", binwidth = NULL)

Arguments

permTestTx_results	A permTestTx.results list object, which can be generated by the permTestTx function.
breaks	Histogram breaks. Default is 15.
alpha	Significance level.
test_type	The type of the test. This argument only receives either two options "one-sided" or "two-sided". Default is "one-sided".
binwidth	Histogram binwidth.

Value

A plot object.

See Also

permTestTx

Examples

file <- system.file(package="RgnTX", "extdata", "permTestTx_results.rds")
permTestTx_results <- readRDS(file)
p_a <- plotPermResults(permTestTx_results, binwidth = 1)
p_a

yue-wang-biomath/RgnTX documentation built on Aug. 24, 2023, 1:12 p.m.