getStopCodon: getStopCodon
In yue-wang-biomath/RgnTX: Colocalization analysis of transcriptome elements in the presence of isoform heterogeneity and ambiguity
getStopCodon R Documentation
getStopCodon
Description
Get stop codon regions for input transcripts. This is an example of customPick function.
Usage
getStopCodon(trans_ids, txdb, ...)
Arguments
trans_ids
A character object containing transcript ids.
txdb
A TxDb object.
...
Any additional parameters needed.
Value
A numeric object.
Examples
library(TxDb.Hsapiens.UCSC.hg19.knownGene)
txdb <- TxDb.Hsapiens.UCSC.hg19.knownGene
trans.ids <- c("170", "782", "974", "1364", "1387")
RS2 <- getStopCodon(trans.ids, txdb)
yue-wang-biomath/RgnTX documentation built on Aug. 24, 2023, 1:12 p.m.
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| getStopCodon | R Documentation |
getStopCodon
Description
Get stop codon regions for input transcripts. This is an example of customPick function.
Usage
getStopCodon(trans_ids, txdb, ...)
Arguments
trans_ids |
A character object containing transcript ids. |
txdb |
A TxDb object. |
... |
Any additional parameters needed. |
Value
A numeric object.
Examples
library(TxDb.Hsapiens.UCSC.hg19.knownGene)
txdb <- TxDb.Hsapiens.UCSC.hg19.knownGene
trans.ids <- c("170", "782", "974", "1364", "1387")
RS2 <- getStopCodon(trans.ids, txdb)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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