#' LipidMaps.Annotation
#'
#' Annotation of features using LipidMaps.
#'
#'
#' @param dataA Feature table from apLCMS or XCMS. The first column should be
#' m/z.
#' @param max.mz.diff Mass tolerance in ppm for database matching. eg: 5
#' @param num_nodes Number of cores to be used for parallel processing. e.g.: 2
#' @param queryadductlist List of adducts to be used for searching. eg:
#' c("M+H","M+Na","M+K"), c("positive") for positive adducts, c("negative") for
#' negative adducts c("all") for all adducts
#' @param mode Ionization mode. e.g.: "pos" or "neg"
#' @param outloc Output folder location
#' @return An object with annotation results
#' @author Karan Uppal <kuppal2@@emory.edu>
#' @keywords ~LipidMaps
LipidMaps.Annotation <- function(dataA, max.mz.diff = 10,
num_nodes = 2, queryadductlist = c("M+2H", "M+H+NH4",
"M+ACN+2H", "M+2ACN+2H", "M+H", "M+NH4", "M+Na",
"M+ACN+H", "M+ACN+Na", "M+2ACN+H", "2M+H", "2M+Na",
"2M+ACN+H"), gradienttype = "Acetonitrile", mode = "pos",
outloc) {
res <- simpleAnnotation(dataA, max.mz.diff = max.mz.diff,
num_nodes = num_nodes, queryadductlist = queryadductlist,
gradienttype = gradienttype, mode = mode, outloc,
db_name = "LipidMaps")
return(res)
}
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