Man pages for yufree/xsetplus
process and annotate data with xcms in simple way

annoAnnotation with MAIT package
fannoAnnotation with xMSannotator package
fanno2Annotation with xMSannotator package for list
fishTwo factor fish experimental with technique and biological...
fish2One factor fish experimental with technique and biological...
fish3Fish experimental with technique and biological replicates
fish4Fish experimental with biological replicates
getbgremoveGet the peak list with blank samples' peaks removed
getbiorepGet the report for biological replicates without technique...
getbiotechrepGet the report for biological replicates.
getcorstdPaired correlationship among peak list based on cluster...
getdataGet xcmsset object in one step with optimized methods.
getdata2Get XCMSnExp object in one step from structured folder path...
getgroup2repGet the two factor DoE report for samples with biological...
getgrouprepGet the report for samples with biological and technique...
getmassdiffIsotope extraction for single group of samples with certain...
getmdgGroup peaks by the mass defect interval group for different...
getQCrawget the data of QC compound for a group of data
getsimoutput the similarity of two dataset
gettechrepGet the report for technique replicates.
gettimegrouprepGet the time series or two factor DoE report for samples with...
getuploadGet the csv files to be submitted to Metaboanalyst
gifmrplot scatter plot for rt-mz profile and output gif file for...
isvacorIndependent Surrogate variable analysis(ISVA) to correct the...
mumdataOutput pathway annotation data for Mummichog algorithm
ploteplot EIC and boxplot for all peaks and return diffreport
plotmrplot the scatter plot for xcmsset objects with threshold
plotmrcplot the diff scatter plot for one xcmsset objects with...
plotpcaplot the PCA of xcmsset
plotrsdplot the rsd influnces of data
svaannoAnnotation with MAIT package of list from svacor function
svabatchPlot the influnces of DoE and Batch effects on each peaks
svacorSurrogate variable analysis(SVA) to correct the unknown batch...
svadataFilter the data with p value and q value
svafannoAnnotation with xMSannotator package
svapcaPrincipal component analysis(PCA) for SVA corrected data and...
svaplotFilter the data with p value and q value and show them
svauploadGet the corrected data after SVA for metabolanalyst
yufree/xsetplus documentation built on Aug. 18, 2018, 10:34 p.m.