fanno: Annotation with xMSannotator package

In yufree/xsetplus: process and annotate data with xcms in a simple way

Description

Annotation with xMSannotator package

Usage

fanno(xset, outloc = "./result/", mode = "pos", db_name = "HMDB",
  num_nodes = 10, ppm = 5, ...)

Arguments

xset	a xcmsset object to be annotated
outloc	the path for your result
mode	defalut is for positive mode, otherwise use 'neg' for negative
db_name	default is 'HMDB', other database options: 'KEGG', 'LipidMaps', 'T3DB'
num_nodes	default 10
ppm	default 5 for mass accuracy
...	parameters for multilevelannotation function in xMSannotator

Value

as shown in xMSannotator package

References

Uppal, K.; Walker, D. I.; Jones, D. P. Anal. Chem. 2017, 89 (2), 1063–1067.

Examples

## Not run: 
path <- "./data/"
xset <- getdata(path)
result <- fanno(xset)

## End(Not run)

yufree/xsetplus documentation built on Nov. 11, 2019, 4:22 p.m.