limmaplot: Filter the data with p value and q value and show them as...

In yufree/xsetplus: process and annotate data with xcms in a simple way

Description

Filter the data with p value and q value and show them as heatmap

Usage

limmaplot(list, lv, pt = 0.05, qt = 0.05, index = NULL)

Arguments

list	results from 'limmafit' function or related batch correction method
lv	factor vector for the group infomation
pt	threshold for p value, default is 0.05
qt	threshold for q value, default is 0.05
index	index for selected peaks

Value

heatmap for the data

See Also

isvacor,svacor, pcacor,limmafit

Examples

## Not run: 
sim <- mzrtsim()
li <- svacor(log(sim$data), as.factor(sim$con))
limmaplot(li,as.factor(sim$con))

## End(Not run)

yufree/xsetplus documentation built on Nov. 11, 2019, 4:22 p.m.