limmapca: Principal component analysis(PCA) for limma result with batch

Description Usage Arguments Value See Also Examples

View source: R/batch.R

Description

Principal component analysis(PCA) for limma result with batch

Usage

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limmapca(list, center = T, scale = T, lv = NULL)

Arguments

list

results from 'limmafit' function or related batch correction method

center

parameters for PCA

scale

parameters for scale

lv

factor vector for the group infomation

Value

plot

See Also

isvacor,svacor, pcacor,limmafit

Examples

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## Not run: 
library(faahKO)
library(enviGCMS)
cdfpath <- system.file('cdf', package = 'faahKO')
list <- getmr(cdfpath, pmethod = ' ')
li <- svacor(list$data,list$group$class)
limmapca(li)

## End(Not run)

yufree/xsetplus documentation built on Nov. 11, 2019, 4:22 p.m.