Man pages for yun-feng/WGDAP
Whole Genome Duplication Analysis Pipeline
| Check_dual | Quality Control for Post-processing |
| data_lasso | Prepare Dataset for Post-processing |
| down_sample | Down Sample The Original Dataset |
| feval | Evaluate Loss |
| FPI | Fixed Point Iteration |
| get_sep | Calculate the Separation Value for Ploidy |
| init_var | Set the Initial Value for Variables |
| int_ploidy | Calculate Integer Ploidy Value for Post-processing |
| load_data | Load Dataset Containing Copy Number Profile |
| par_lasso | Prepare Parameters for Post-processing |
| plot_after | Plot Recurrent CNV After WGD for each loci |
| plot_bar | Plot the Original Copy number for Selected Loci |
| plot_before | Plot Recurrent CNV Before WGD for each loci |
| plot_ploidy | Plot Inferred v.s. Average Ploidy |
| plot_scatter | Plot Recurrent CNV Before v.s. After WGD for each loci |
| Run_lasso | Post-processing |
| set_par | Set Up Parameters for Analysis |
| var_lasso | Prepare Variables for Post-processing |
