Description Usage Arguments Details Value Examples
Set (haplotype) ploidy value to either 1 or 2.
1 | int_ploidy(var, sep)
|
var |
The current value for all variables (see |
sep |
The separation value (see |
To get the interger ploidy value, we set all the infered ploidy value from FPI to be either 1 or 2, based on their value relative to the seperation value.
This gives us (haplotype) ploidy values for all samples, based on which we could run a lasso-like post-processing step. The post-processing could make the prediction for recurrent CNV before and after WGD more biologically meaningful.
Cector containing integer-valued ploidy
1 | g_int=int_ploidy(FPI_result$var,g_sep)
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