ceRNAFunction: Functional enrichment analysis

In ywhsiao/ceRNAR: ceRNAR: An R Package for Identification and Analysis of ceRNAs-miRNA Triplets

Functional enrichment analysis

Description

A function to conduct Functional enrichment analysis for biological interpretation. The databases supported in this function include Gene Ontology (GO; http://geneontology.org/) and Kyoto Encyclopedia of Genes and Genomes (KEGG; https://www.genome.jp/kegg/).

Usage

ceRNAFunction(
  path_prefix = NULL,
  project_name = "demo",
  disease_name = "DLBC",
  pairs_cutoff = 1
)

Arguments

path_prefix	user's working directory
project_name	the project name that users can assign (default: demo)
disease_name	the abbreviation of disease that users are interested in (default: DLBC)
pairs_cutoff	at least the number of ceRNA pairs that a mirna must have (default: 1)

Value

a list object

Examples

ceRNAFunction(
path_prefix = NULL,
project_name = 'demo',
disease_name = 'DLBC',
pairs_cutoff = 1
)

ywhsiao/ceRNAR documentation built on Aug. 6, 2023, 3:13 p.m.