ceRNAIntergate: Integration of the possible ceRNA pairs among published tools

In ywhsiao/ceRNAR: ceRNAR: An R Package for Identification and Analysis of ceRNAs-miRNA Triplets

Integration of the possible ceRNA pairs among published tools

Description

A function to integrate the possible ceRNA pairs that are found by ceRNAR algorithm with those from other tools, such as SPONGE (List et al., 2019) and RJAMI (Hornakova et al.,2018)

Usage

ceRNAIntegrate(
  path_prefix = NULL,
  project_name = "demo",
  disease_name = "DLBC",
  num_workers = 1
)

Arguments

path_prefix	user's working directory
project_name	the project name that users can assign
disease_name	the abbreviation of disease that users are interested in
num_workers	the number of CPU

Value

a dataframe object

Examples

library(SPONGE)
ceRNAIntegrate(
path_prefix = NULL,
project_name = 'demo',
disease_name = 'DLBC',
num_workers = 1
)

ywhsiao/ceRNAR documentation built on Aug. 6, 2023, 3:13 p.m.