R/plotspin.r

In zarquon42b/RResScripts: collection of scripts

 
plotspin <- function(x,ramp=TRUE,...){
 #plot x <- abs(x$Sp)/max(abs(x$Sp))
     min <- min(x)
     max <- max(x)
 # lim <- c(1,max(dim(x)))
 # print(lim)
     yLabels <- rownames(x)
     xLabels <- colnames(x)
     title <-c()
  # check for additional function arguments
  if( length(list(...)) ){
    Lst <- list(...)
    if( !is.null(Lst$zlim) ){
       min <- Lst$zlim[1]
       max <- Lst$zlim[2]
    }
    if( !is.null(Lst$yLabels) ){
       yLabels <- c(Lst$yLabels)
    }
    if( !is.null(Lst$xLabels) ){
       xLabels <- c(Lst$xLabels)
    }
    if( !is.null(Lst$title) ){
       title <- Lst$title
    }
  }
# check for null values
if( is.null(xLabels) ){
   xLabels <- c(1:ncol(x))
}
if( is.null(yLabels) ){
   yLabels <- c(1:nrow(x))
}
if (ramp)
  {
    layout(matrix(data=c(1,2), nrow=1, ncol=2), widths=c(4,1), heights=c(1,1))
  }
 # Red and green range from 0 to 1 while Blue ranges from 1 to 0
 ColorRamp <- gray(seq(1,0,length=256))  # Red
                 #  seq(0,0,length=256),  # Green
                 #  seq(1,0,length=256))  # Blue
 ColorLevels <- seq(min, max, length=length(ColorRamp))

 # Reverse Y axis
 reverse <- nrow(x) : 1
 yLabels <- yLabels[reverse]
 x <- x[reverse,]

 # Data Map
 par(mar = c(3,5,2.5,2))
 image(1:length(xLabels), 1:length(yLabels), t(x), col=ColorRamp, xlab="",
 ylab="", axes=FALSE, zlim=c(min,max))
 if( !is.null(title) ){
    title(main=title)
 }
axis(BELOW<-1, at=1:length(xLabels), labels=xLabels, cex.axis=0.7)
 axis(LEFT <-2, at=1:length(yLabels), labels=yLabels, las= HORIZONTAL<-1,
 cex.axis=0.7)

 # Color Scale
 par(mar = c(3,2.5,2.5,2))
     if (ramp)
       {
         image(1, ColorLevels, matrix(data=ColorLevels, ncol=length(ColorLevels),nrow=1),      col=ColorRamp,useRaster=T, xlab="",ylab="", xaxt="n")
       #  layout(1)
      }

# 
}
# ----- END plot function ----- #