API for zellerlab/SIMBA
Simulation of Microbiome Data with Biological Accuracy
| Global functions | |
|---|---|
| ANCOM | Source code |
| apply.test | Man page Source code |
| calculate.phi | Source code |
| check.common.simulation.parameters | Source code |
| check.eval.parameters | Source code |
| check.filtering.parameters | Source code |
| check.original.data | Source code |
| check.resampling.limits | Source code |
| check.simulation.location | Source code |
| check.simulation.parameters | Source code |
| check.testing.parameters | Source code |
| clean.meta.data | Source code |
| clear.biased.idx | Source code |
| clear.idx | Source code |
| confounder.check | Source code |
| create.biased.idx | Man page Source code |
| create.data.simulation | Man page Source code |
| create.resampling.simulations | Source code |
| create.test.idx | Man page Source code |
| eval.real.test | Source code |
| eval.test | Man page Source code |
| feature_table_pre_process | Source code |
| filter.data | Source code |
| fit.parameters | Man page Source code |
| fixInf | Man page Source code |
| funcForceMinCountsInMinSamples | Source code |
| funcGetExp | Source code |
| funcGetMu | Source code |
| funcGetRowMetric | Source code |
| funcGetSD | Source code |
| funcMakeFeature | Source code |
| funcRoundMatrix | Source code |
| funcSample | Source code |
| funcSpikeNewBug | Source code |
| funcTruncatedRLNorm | Source code |
| funcUpdateDistributionToExpectation | Source code |
| func_zero_inflate | Source code |
| microbesim | Source code |
| norm.data | Source code |
| pcoa.check.parameters | Source code |
| pcoa.plot | Man page Source code |
| perform.idx.bias.checks | Source code |
| piMoM4Wald | Source code |
| qbetabin | Source code |
| rDirichlet | Source code |
| reality.check | Man page Source code |
| reality.check.parameters | Source code |
| rmvbetabin | Source code |
| rmvnegbin | Man page Source code |
| run.test | Source code |
| save.biomarker.idx | Source code |
| save.confounder.idx | Source code |
| save.idx | Source code |
| save.random.idx | Source code |
| select.features | Source code |
| simulate.MMH | Man page Source code |
| simulate.SimMSeq | Man page Source code |
| simulate.W | Man page Source code |
| simulate.betabin | Man page Source code |
| simulate.dirmult | Man page Source code |
| simulate.markers.MMH | Source code |
| simulate.markers.W | Source code |
| simulate.markers.betabin | Man page Source code |
| simulate.markers.dirmult | Man page Source code |
| simulate.markers.negbin | Man page Source code |
| simulate.negbin | Man page Source code |
| simulate.resampling | Source code |
| simulate.sparseDOSSA | Source code |
| test.ANCOM | Source code |
| test.ANCOM.2 | Source code |
| test.ANCOMBC | Source code |
| test.DESeq | Source code |
| test.LDM | Source code |
| test.MGS | Source code |
| test.ZIBseq | Source code |
| test.ZIBseq_sqrt | Source code |
| test.ZicoSeq | Source code |
| test.corncob | Source code |
| test.edgeR | Source code |
| test.fastANCOM | Source code |
| test.fisher | Source code |
| test.linda | Source code |
| test.lm | Source code |
| test.ttest | Source code |
| test.via.limma | Source code |
| test.wilcoxon | Source code |
| toy.feat | Man page |
| toy.meta | Man page |
| validate.original.data | Source code |
