pcoa.plot: Plot PCoAs for simulated data

In zellerlab/SIMBA: Simulation of Microbiome Data with Biological Accuracy

Plot PCoAs for simulated data

Description

This function will generate a principal coordinate analysis plot comparing the original data and the simulated data for different groups

Usage

pcoa.plot(sim.location, group, distance)

Arguments

sim.location	file name for the .h5 file containing the simulations
group	character, name of the group within the .h5 file containing the simulated features
distance	character, name of the distance that should be used to calculate the PCoA, should be either "bray" or "log-euclidean"

Value

This function returns a ggplot2 object with a PCoA plot, coloured by group (either real or simulated data).

zellerlab/SIMBA documentation built on June 2, 2025, 6:25 a.m.