Man pages for zellerlab/SIMBA
Simulation of Microbiome Data with Biological Accuracy
| apply.test | Apply different tests to the simulated data |
| create.biased.idx | Create biased indices for testing |
| create.data.simulation | Simulate metagenomic features |
| create.test.idx | Create indices for testing |
| eval.test | Evaluate the results of different tests |
| fit.parameters | Fit the parameters from the original data |
| fixInf | helper function |
| pcoa.plot | Plot PCoAs for simulated data |
| reality.check | Check simulations for realism |
| rmvnegbin | helper function to generate correlated counts |
| simulate.betabin | # wrapper for the beta-binomial simulations |
| simulate.dirmult | # wrapper for the Dirichlet simulations |
| simulate.markers.betabin | # wrapper for the actual data generation |
| simulate.markers.dirmult | # wrapper for the actual data generation |
| simulate.markers.negbin | # wrapper for the actual data generation |
| simulate.MMH | # wrapper for the McMurdie&Holmes simulations |
| simulate.negbin | # wrapper for the negative-binomial simulations |
| simulate.SimMSeq | # wrapper for the Yang and Chen |
| simulate.W | # wrapper for the Weiss simulations |
| toy.feat | SIMBA example features |
| toy.meta | SIMBA example metadata |
