associations-methods: Retrieve the results of association testing from a SIAMCAT...

In zellerlab/siamcat: Statistical Inference of Associations between Microbial Communities And host phenoTypes

Retrieve the results of association testing from a SIAMCAT object

Description

Function to retrieve the results of association testing

Usage

associations(siamcat, verbose=1)

## S4 method for signature 'siamcat'
associations(siamcat, verbose = 1)

Arguments

siamcat	(Required). An instance of siamcat-class containing the results of association testing
verbose	integer, if the slot is empty, should a message be printed? values can be either 0 (no output) or 1 (print message)

Details

The function returns the results of the association testing procedure as dataframe. See check.associations for more details.

Value

A data.frame of association testing results or NULL

Examples

data(siamcat_example)
temp <- associations(siamcat_example)
head(temp)

zellerlab/siamcat documentation built on Feb. 1, 2024, 2:21 a.m.