norm_feat-methods: Retrieve the information stored in the 'norm_feat' slot...

In zellerlab/siamcat: Statistical Inference of Associations between Microbial Communities And host phenoTypes

Retrieve the information stored in the norm_feat slot within a SIAMCAT object

Description

Function to retrieve the information stored in the norm_feat slot within a SIAMCAT object

Usage

norm_feat(siamcat, verbose=1)

## S4 method for signature 'siamcat'
norm_feat(siamcat, verbose = 1)

Arguments

siamcat	(Required). An instance of siamcat-class that contains normalized features
verbose	integer, if the slot is empty, should a message be printed? values can be either 0 (no output) or 1 (print message)

Details

The function will return a list containing the information stored in the norm_feat slot of a SIAMCAT object. This list contains:

• norm.feat - normalized features as matrix, see get.norm_feat.matrix

• norm.param - parameters used for normalization, see normalize.features

Value

The list stored in the norm_feat slot of the SIAMCAT object or NULL

Examples

data(siamcat_example)
temp <- norm_feat(siamcat_example)
names(temp)

zellerlab/siamcat documentation built on Feb. 1, 2024, 2:21 a.m.