Files in zeynebkurtUCLA/Mergeomics
Integrative network analysis of omics data
DESCRIPTION
NAMESPACE
R/cle.LS.R
R/msea.kda.onestep.R
data/job_kda_analyze.RData
inst/NEWS
inst/extdata/Significant_pathways.info.txt
inst/extdata/Significant_pathways.txt
inst/extdata/coexpr.info.txt
inst/extdata/genes.hdlc_040kb_ld70.human_eliminated.txt
inst/extdata/marker.hdlc_040kb_ld70.human_eliminated.txt
inst/extdata/mergedModules.info.txt
inst/extdata/mergedModules.txt
inst/extdata/modules.mousecoexpr.liver.human.txt
inst/extdata/msea2kda.nodes.txt
inst/extdata/network.mouseliver.mouse.txt
inst/extdata/symbols.txt
inst/unitTests/test_kda.analyze.R
inst/unitTests/test_ssea.analyze.R
man/MSEA.KDA.onestep.Rd
man/Mergeomics-package.Rd
man/job.kda.Rd
man/kda.analyze.Rd
man/kda.analyze.exec.Rd
man/kda.analyze.simulate.Rd
man/kda.analyze.test.Rd
man/kda.configure.Rd
man/kda.finish.Rd
man/kda.finish.estimate.Rd
man/kda.finish.save.Rd
man/kda.finish.summarize.Rd
man/kda.finish.trim.Rd
man/kda.prepare.Rd
man/kda.prepare.overlap.Rd
man/kda.prepare.screen.Rd
man/kda.start.Rd
man/kda.start.edges.Rd
man/kda.start.identify.Rd
man/kda.start.modules.Rd
man/kda2cytoscape.Rd
man/kda2cytoscape.colorize.Rd
man/kda2cytoscape.colormap.Rd
man/kda2cytoscape.drivers.Rd
man/kda2cytoscape.edges.Rd
man/kda2cytoscape.exec.Rd
man/kda2cytoscape.identify.Rd
man/kda2himmeli.Rd
man/kda2himmeli.colorize.Rd
man/kda2himmeli.colormap.Rd
man/kda2himmeli.drivers.Rd
man/kda2himmeli.edges.Rd
man/kda2himmeli.exec.Rd
man/kda2himmeli.identify.Rd
man/ssea.analyze.Rd
man/ssea.analyze.observe.Rd
man/ssea.analyze.randgenes.Rd
man/ssea.analyze.randloci.Rd
man/ssea.analyze.simulate.Rd
man/ssea.analyze.statistic.Rd
man/ssea.control.Rd
man/ssea.finish.Rd
man/ssea.finish.details.Rd
man/ssea.finish.fdr.Rd
man/ssea.finish.genes.Rd
man/ssea.meta.Rd
man/ssea.prepare.Rd
man/ssea.prepare.counts.Rd
man/ssea.prepare.structure.Rd
man/ssea.start.Rd
man/ssea.start.configure.Rd
man/ssea.start.identify.Rd
man/ssea.start.relabel.Rd
man/ssea2kda.Rd
man/ssea2kda.analyze.Rd
man/ssea2kda.import.Rd
man/tool.aggregate.Rd
man/tool.cluster.Rd
man/tool.cluster.static.Rd
man/tool.coalesce.Rd
man/tool.coalesce.exec.Rd
man/tool.coalesce.find.Rd
man/tool.coalesce.merge.Rd
man/tool.fdr.Rd
man/tool.fdr.bh.Rd
man/tool.fdr.empirical.Rd
man/tool.graph.Rd
man/tool.graph.degree.Rd
man/tool.graph.list.Rd
man/tool.metap.Rd
man/tool.normalize.Rd
man/tool.normalize.quality.Rd
man/tool.overlap.Rd
man/tool.read.Rd
man/tool.save.Rd
man/tool.subgraph.Rd
man/tool.subgraph.find.Rd
man/tool.subgraph.search.Rd
man/tool.subgraph.stats.Rd
man/tool.translate.Rd
man/tool.unify.Rd
tests/runTests.R
vignettes/Mergeomics.Rnw
vignettes/top5KDs.png
