plot_BrS_panel: Plot bronze-standard (BrS) panel

Description Usage Arguments

View source: R/plot-BrS-panel.R

Description

Now only works for singleton etiologies.

Usage

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plot_BrS_panel(MBS, model_options, clean_options, res_nplcm, bugs.dat,
  top_BrS = 1.3, prior_shape = "boxplot", cexval = 1, srtval = 0)

Arguments

MBS

Matrix of bronze-standard measurements. Rows for subjects (cases at the top, controls at the bottom), columns for pathogen-specimen combination.

model_options

See nplcm

clean_options

See clean_perch_data

res_nplcm

See nplcm_read_folder

bugs.dat

Data input for the model fitting.

top_BrS

Numerical value to specify the rightmost limit on the horizontal axis for the BrS panel.

prior_shape

interval or boxplot - for how to represent prior/posteriors of the TPR/FPRs of measurements.

cexval

Default is 1 - size of text of the BrS percentages.

srtval

Default is 0 - the direction of the text for the BrS percentages.


zhenkewu/nplcm documentation built on May 28, 2017, 1:43 p.m.