plot_group_etiology: Plot viral etiology posterior and distribution within...

Description Usage Arguments Value

View source: R/plot-group-etiology.R

Description

DN: 1. the pathogens should have been ordered as in the perch_clean_data() function. This function picks out pathogens not based on pathogen category lookup table, but based on the order of pathogens that enter the analysis.

Usage

1
plot_group_etiology(DIR_NPLCM, ksFrac = 1, levellabel = 5)

Arguments

DIR_NPLCM

The file path to the result folder

ksFrac

A number between 0 and 1, which is the fraction of samples used to calculate kernel density

levellabel

The contour line to be drawn in the final plot. Default is 5, which represents the contour of the 95 percent support region.

Value

A figure with group etiology.


zhenkewu/nplcm documentation built on May 28, 2017, 1:43 p.m.