Description Usage Arguments Value
View source: R/plot-group-etiology.R
DN: 1. the pathogens should have been ordered as in the perch_clean_data() function. This function picks out pathogens not based on pathogen category lookup table, but based on the order of pathogens that enter the analysis.
1 | plot_group_etiology(DIR_NPLCM, ksFrac = 1, levellabel = 5)
|
DIR_NPLCM |
The file path to the result folder |
ksFrac |
A number between 0 and 1, which is the fraction of samples used to calculate kernel density |
levellabel |
The contour line to be drawn in the final plot. Default is
|
A figure with group etiology.
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