plot_logORmat: Visualize pairwise log odds ratios (LOR) for data that are...
In zhenkewu/nplcm: Nested Partially-Latent Class Models (nplcm)
Description
Usage
Arguments
Details
Value
Description
Visualize pairwise log odds ratios (LOR) for data that are available in
both cases and controls
Usage
1
plot_logORmat(data_nplcm, pathogen_display, logOR_rounding = 2)
Arguments
data_nplcm
See assign_model.
pathogen_display
The pathogen vector in desired order for display.
It can be of larger length than that of pathogen_BrS.
logOR_rounding
Rounding number of the log odds ratio. Default is 2.
Details
plot_logORmat visualizes a matrix of values (log odds ratios here).
Cases' values are on upper right and controls on lower
left. Log odds ratio (LOR) is at the top of the cell. Below it, its standard
error is in smaller type, using the same color as the LOR. Then the
estimate is divided by its standard error. If it is less than 1 in
absolute value, we put a plus (red) or minus (blue) when
the Z-stat is between 1-2 in absolute value and put the actual
value when the Z is greater than 2.
Value
Figure of LOR matrix and relavent s.e. and significance information.
zhenkewu/nplcm documentation built on May 4, 2019, 10:19 p.m.
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Description Usage Arguments Details Value
Description
Visualize pairwise log odds ratios (LOR) for data that are available in both cases and controls
Usage
1 | plot_logORmat(data_nplcm, pathogen_display, logOR_rounding = 2)
|
Arguments
data_nplcm |
See |
pathogen_display |
The pathogen vector in desired order for display.
It can be of larger length than that of |
logOR_rounding |
Rounding number of the log odds ratio. Default is 2. |
Details
plot_logORmat visualizes a matrix of values (log odds ratios here).
Cases' values are on upper right and controls on lower
left. Log odds ratio (LOR) is at the top of the cell. Below it, its standard
error is in smaller type, using the same color as the LOR. Then the
estimate is divided by its standard error. If it is less than 1 in
absolute value, we put a plus (red) or minus (blue) when
the Z-stat is between 1-2 in absolute value and put the actual
value when the Z is greater than 2.
Value
Figure of LOR matrix and relavent s.e. and significance information.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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