zhilongjia/GeneExpressionSignature: Gene Expression Signature based Similarity Metric

This package gives the implementations of the gene expression signature and its distance to each. Gene expression signature is represented as a list of genes whose expression is correlated with a biological state of interest. And its distance is defined using a nonparametric, rank-based pattern-matching strategy based on the Kolmogorov-Smirnov statistic. Gene expression signature and its distance can be used to detect similarities among the signatures of drugs, diseases, and biological states of interest.

Getting started

Package details

AuthorYang Cao
Bioconductor views GeneExpression
MaintainerYang Cao <[email protected]>, Fei Li <[email protected]>,Lu Han <[email protected]>
LicenseGPL-2
Version1.13.1
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("zhilongjia/GeneExpressionSignature")
zhilongjia/GeneExpressionSignature documentation built on May 28, 2017, 1:47 p.m.