makeExpressionSet: Convert data.frame into ExpressionSet Object.
In zhilongjia/GeneExpressionSignature: Gene Expression Signature based Similarity Metric
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Convert data.frame into ExpressionSet Object.
Usage
1
makeExpressionSet(dat, state = colnames(dat))
Arguments
dat
a data.frame with gene in row, sample in column
state
sample state. For multi instances.
Value
an ExpressionSet object
Author(s)
Zhilong Jia
Examples
1
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9
dat <- data.frame(d1=1:600, D1=600:1, d2=sample(600))
datExp <- makeExpressionSet(dat, state=c("d", "D", "d"))
# Only for rankMerging
MergingSet <- RankMerging(datExp,"Spearman",weighted=TRUE)
#ds <- ScoreGSEA(datExp, 250)
#ds1 <- ScorePGSEA(datExp, 250)
#ds2 <- ScoreGSEA(MergingSet, 250)
#ds3 <- ScorePGSEA(MergingSet, 250)
zhilongjia/GeneExpressionSignature documentation built on May 4, 2019, 11:21 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
Convert data.frame into ExpressionSet Object.
Usage
1 | makeExpressionSet(dat, state = colnames(dat))
|
Arguments
dat |
a data.frame with gene in row, sample in column |
state |
sample state. For multi instances. |
Value
an ExpressionSet object
Author(s)
Zhilong Jia
Examples
1 2 3 4 5 6 7 8 9 | dat <- data.frame(d1=1:600, D1=600:1, d2=sample(600))
datExp <- makeExpressionSet(dat, state=c("d", "D", "d"))
# Only for rankMerging
MergingSet <- RankMerging(datExp,"Spearman",weighted=TRUE)
#ds <- ScoreGSEA(datExp, 250)
#ds1 <- ScorePGSEA(datExp, 250)
#ds2 <- ScoreGSEA(MergingSet, 250)
#ds3 <- ScorePGSEA(MergingSet, 250)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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