Man pages for ziyili20/TOAST
Tools for the analysis of heterogeneous tissues
| assignCellType | Align cell types when reference proportions are known |
| beta_emp | Simulated methylation 450K array data with related |
| CBS_PBMC_array | An example dataset for partial reference-free cell... |
| cedar | Testing cell type specific differential signals for specified... |
| ChooseMarker | Choose cell type-specific markers from pure cell type... |
| csDeconv | Improve reference-free deconvolution using cross-cell type... |
| csTest | Testing differential signals for specified phenotype and cell... |
| DEVarSelect | Feature selection for reference-free deconvolution using... |
| findRefinx | findRefinx |
| fitModel | Fit model with proportions and phenotypes. |
| GetPrior | Get prior knowledge for supported tissue types |
| makeDesign | Generate design matrix from input phenotypes and proportions. |
| MDeconv | Estimate cell compoisitons via partial reference-free... |
| myprojectMix | Replicate the function myprojectMix() from RefFreeEWAS... |
| myRefFreeCellMix | Replicate the function RefFreeCellMix() from RefFreeEWAS... |
| myRefFreeCellMixInitialize | Replicate the function RefFreeCellMixInitialize() from... |
| plotCorr | Show DE/DM state correlation between cell types |
| RA_100samples | An example dataset for cellular proportion estimation and... |
| Tsisal | Complete Deconvolution of DNA methylation data based on TOAST... |
