beta_emp: Simulated methylation 450K array data with related

In ziyili20/TOAST: Tools for the analysis of heterogeneous tissues

Simulated methylation 450K array data with related

Description

This dataset is a list containing two matrices, one of which is methylation 450K array data of 3000 CpG sites on 50 samples, the other is methylation 450K array data of 3000 matched CpG sites on three immune cell types. The first dataset is generated by simulation. It originally has 459226 features and 50 samples.We reduce it to 3000 CpGs by random selection.

Usage

data("beta_emp")

Format

The format is: List of 2 $ Y.raw: num [1:3000, 1:50] 0.7661 0.0968 0.8882 0.0286 0.6956 ... ..- attr(*, "dimnames")=List of 2 .. ..$ : chr [1:3000] "cg08752431" "cg14555682" "cg23086843" "cg20308511" ... .. ..$ : NULL $ ref.m: num [1:3000, 1:3] 0.7712 0.0996 0.9065 0.037 0.7242 ... ..- attr(*, "dimnames")=List of 2 .. ..$ : chr [1:3000] "cg08752431" "cg14555682" "cg23086843" "cg20308511" ... .. ..$ : chr [1:3] "CD4T" "CD8T" "BCell"

Examples

data(beta_emp)

ziyili20/TOAST documentation built on Aug. 28, 2022, 11:28 a.m.