RA_100samples: An example dataset for cellular proportion estimation and...
In ziyili20/TOAST: Tools for the analysis of heterogeneous tissues
RA_100samples R Documentation
An example dataset for cellular proportion
estimation and multiple factor design
Description
The dataset contains normalized beta valutes
for 3000 CpGs from 100 samples (50 Rheumatoid
arthritis patients and 50 controls) and their
phenotypes (disease status, age, and gender).
The dataset also contains a sub-setted blood
reference matrix for the matched 3000 CpGs.
This data was obtained and processed based
on GSE42861.
Usage
data("RA_100samples")
References
Liu Y, Aryee MJ, Padyukov L, Fallin MD et al.
Epigenome-wide association data implicate DNA
methylation as an intermediary of genetic risk
in rheumatoid arthritis. Nat Biotechnol
2013 Feb;31(2):142-7. PMID: 23334450
Examples
data(RA_100samples)
RA_100samples$Y_raw[1:5,1:5]
head(RA_100samples$Pheno)
head(RA_100samples$Blood_ref)
ziyili20/TOAST documentation built on Aug. 28, 2022, 11:28 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| RA_100samples | R Documentation |
An example dataset for cellular proportion estimation and multiple factor design
Description
The dataset contains normalized beta valutes for 3000 CpGs from 100 samples (50 Rheumatoid arthritis patients and 50 controls) and their phenotypes (disease status, age, and gender). The dataset also contains a sub-setted blood reference matrix for the matched 3000 CpGs. This data was obtained and processed based on GSE42861.
Usage
data("RA_100samples")
References
Liu Y, Aryee MJ, Padyukov L, Fallin MD et al. Epigenome-wide association data implicate DNA methylation as an intermediary of genetic risk in rheumatoid arthritis. Nat Biotechnol 2013 Feb;31(2):142-7. PMID: 23334450
Examples
data(RA_100samples) RA_100samples$Y_raw[1:5,1:5] head(RA_100samples$Pheno) head(RA_100samples$Blood_ref)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.