plot_positives: Plot Multiple Positives

Description Usage Arguments Examples

View source: R/plot_positives.R

Description

This function plots the cells that are positive at multiple markers at the same time.

Usage

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plot_positives(seurat_object, markers, marker_names = NULL,
  alpha_neg = 0.1, reduction = "umap", verbose = FALSE)

Arguments

seurat_object

the object to retrieve the data from.

markers

positive markers of the cells of interest.

marker_names

optional names for markers

alpha_neg

transparency value for negative points.

reduction

dimensionality reduction, could be c('pca','tsne','umap')

verbose

whether to print IDs of positive cells.

Examples

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zolotarovgl/digiworm.plot documentation built on May 6, 2019, 8:31 p.m.