plot_positives_digiworm: Plot Multiple Positives in Digiworm

In zolotarovgl/digiworm.plot: Useful plotting functions for Seurat objects

Description

This function plots the cells that are positive at multiple markers at the same time using tSNE coordinatess from digiworm.

Usage

plot_positives_digiworm(seurat_object, markers, marker_names = NULL,
  alpha_neg = 0.1)

Arguments

seurat_object	the object to retrieve the cell data from ( cells that don't appear in this object are not plotted!)
markers	positive markers of the cells of interest.
marker_names	optional names for markers
alpha_neg	transparency value for negative points.

Examples

plot_positives_digiworm()

zolotarovgl/digiworm.plot documentation built on May 6, 2019, 8:31 p.m.