read10XVisium: Read the spatial transcriptomics data measured on 10X Visium...
In DR.SC: Joint Dimension Reduction and Spatial Clustering
read10XVisium R Documentation
Read the spatial transcriptomics data measured on 10X Visium platform
Description
Read the spatial transcriptomics data measured on 10X Visium platform as a Seurat object, where the spatial coordinates are saved in the metadata, named "row" and "col".
Usage
read10XVisium(dirname)
Arguments
dirname
A string, the dictory of Visium datasets
Details
Nothing
Value
return a Seurat object.
Note
nothing
Author(s)
Wei Liu
References
None
See Also
None
Examples
## Not run:
## set your file directory, then read it.
data_name <- "D/HCC"
HCC1 <- read10XVisium(data_name)
## End(Not run)
DR.SC documentation built on Aug. 10, 2023, 1:10 a.m.
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| read10XVisium | R Documentation |
Read the spatial transcriptomics data measured on 10X Visium platform
Description
Read the spatial transcriptomics data measured on 10X Visium platform as a Seurat object, where the spatial coordinates are saved in the metadata, named "row" and "col".
Usage
read10XVisium(dirname)
Arguments
dirname |
A string, the dictory of Visium datasets |
Details
Nothing
Value
return a Seurat object.
Note
nothing
Author(s)
Wei Liu
References
None
See Also
None
Examples
## Not run:
## set your file directory, then read it.
data_name <- "D/HCC"
HCC1 <- read10XVisium(data_name)
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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