setNodeWeights: Set node weights
In ROntoTools: R Onto-Tools suite
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Set node weights
Usage
1
setNodeWeights(graphList, weights = NULL, defaultWeight = 1)
Arguments
graphList
a list of graph (e.g., graphNEL) objects
weights
named vector or matrix; if vector, the node is going to have the same weight in all graphs it appears;
if matrix, the rows represent nodes and columns represent graphs and the node will have different weights in each pathway
defaultWeight
the default weight for all nodes not set by the parameter weights
Value
The graphList with the node weights set.
Author(s)
Calin Voichita and Sorin Draghici
Examples
1
2
3
4
5
6
# load the set of pathways
kpg <- keggPathwayGraphs("hsa")
kpg <- setNodeWeights(kpg)
nodeWeights(kpg[["path:hsa04110"]])
ROntoTools documentation built on Nov. 8, 2020, 7:41 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
Set node weights
Usage
1 | setNodeWeights(graphList, weights = NULL, defaultWeight = 1)
|
Arguments
graphList |
a list of |
weights |
named vector or matrix; if vector, the node is going to have the same weight in all graphs it appears; if matrix, the rows represent nodes and columns represent graphs and the node will have different weights in each pathway |
defaultWeight |
the default weight for all nodes not set by the parameter |
Value
The graphList with the node weights set.
Author(s)
Calin Voichita and Sorin Draghici
Examples
1 2 3 4 5 6 | # load the set of pathways
kpg <- keggPathwayGraphs("hsa")
kpg <- setNodeWeights(kpg)
nodeWeights(kpg[["path:hsa04110"]])
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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