df_r0: Create dataframe for basic reproduction number

In thednainus/senegalHIVmodel: Analysis of HIV data from Senegal

Create dataframe for basic reproduction number

Description

Create dataframe for basic reproduction number (R0)

Usage

df_r0(run, burnin, par_names, times, T0, T1, GAMMA)

Arguments

run	object of class "mcmcSamplerList" and "bayesianOutput"
burnin	intenger representing number of samples to remove as burnin
par_names	vector containinig the parameter names
times	vector of time points
T0	initial time for simulations
T1	end time for simulations
GAMMA	double representing the stage of infection

Details

Basic Reproduction Number (R0) is calculated based on the equation R0 = \beta / \gamma. In our model \gamma = 0.1 and \beta is represented by each of the linear function parameters (ex: gpsp0, gpsp1, etc). \beta is the number of transmissions per infected individuals.

Value

dataframe of median, and upper and lower bounds for the posterior, and MAP

Examples

#TO DO

thednainus/senegalHIVmodel documentation built on Oct. 14, 2024, 5:46 a.m.