data_format: Reformat collection dates of HIV samples
In thednainus/senegalHIVmodel: Analysis of HIV data from Senegal
data_format R Documentation
Reformat collection dates of HIV samples
Description
This function formats dates in YYYY-MM-DD to decimal format. Decimal
format is used in tip dating analysis.
Usage
data_format(metadata, country)
Arguments
metadata
Object of class dataframe. It contains information
on collection dates for HIV sequences in YYYY-MM-DD format.
country
Object of class character. It should be in the form of
"SN" or "SN.CGR".
Details
The returned elements in the list contains 2 dataframes. The
first dataframe have all information of collection dates in decimal
format, and NA is used for dates in which only part of
the collection date is available . For example, when we only know
collection date by year and month (YYYY.MM), or year only (YYYY). The
second dataframe in the list will have the upper and lower bounds
for the samples that we only partially know the collection dates.
Value
A list in which the first element contain information in which the
complete collection date is known; the second element of the list contain
elements that have missing dating information
Examples
# write example here
thednainus/senegalHIVmodel documentation built on Oct. 14, 2024, 5:46 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| data_format | R Documentation |
Reformat collection dates of HIV samples
Description
This function formats dates in YYYY-MM-DD to decimal format. Decimal format is used in tip dating analysis.
Usage
data_format(metadata, country)
Arguments
metadata |
Object of class dataframe. It contains information on collection dates for HIV sequences in YYYY-MM-DD format. |
country |
Object of class character. It should be in the form of "SN" or "SN.CGR". |
Details
The returned elements in the list contains 2 dataframes. The first dataframe have all information of collection dates in decimal format, and NA is used for dates in which only part of the collection date is available . For example, when we only know collection date by year and month (YYYY.MM), or year only (YYYY). The second dataframe in the list will have the upper and lower bounds for the samples that we only partially know the collection dates.
Value
A list in which the first element contain information in which the complete collection date is known; the second element of the list contain elements that have missing dating information
Examples
# write example here
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.