organize_metadata_bySubtype: Organize metadata by HIV subtype.
In thednainus/senegalHIVmodel: Analysis of HIV data from Senegal
Description
Usage
Arguments
Value
Examples
Description
Function that organizes metadata for dating analysis purpose.
It will subset data for subtypes B, C and CRF 02_AG, and collection
date will be formated as decimal for tip dating analysis
Usage
1
organize_metadata_bySubtype(all_data_SN, all_data_CGR, code)
Arguments
all_data_SN
Object of class dataframe. This dataframe contains
metadata for Senegal sequences
all_data_CGR
Object of class dataframe. This dataframe contains
metadata for CGR sequences
code
If code = 1, it will return as a list dataframes for each subtype,
and collection dates are formatted to decimal. If code = 2, it will return
a list of dataframes for (1) all Senegal and CGR sequences and (2) samples
in which collection date is missing.
Value
a list of dataframes
Examples
1
TO DO
thednainus/senegalHIVmodel documentation built on Oct. 28, 2021, 3:11 p.m.
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Description Usage Arguments Value Examples
Description
Function that organizes metadata for dating analysis purpose. It will subset data for subtypes B, C and CRF 02_AG, and collection date will be formated as decimal for tip dating analysis
Usage
1 | organize_metadata_bySubtype(all_data_SN, all_data_CGR, code)
|
Arguments
all_data_SN |
Object of class dataframe. This dataframe contains metadata for Senegal sequences |
all_data_CGR |
Object of class dataframe. This dataframe contains metadata for CGR sequences |
code |
If code = 1, it will return as a list dataframes for each subtype, and collection dates are formatted to decimal. If code = 2, it will return a list of dataframes for (1) all Senegal and CGR sequences and (2) samples in which collection date is missing. |
Value
a list of dataframes
Examples
1 | TO DO
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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