organize_metadata_bySubtype: Organize metadata by HIV subtype.

In thednainus/senegalHIVmodel: Analysis of HIV data from Senegal

Organize metadata by HIV subtype.

Description

Function that organizes metadata for dating analysis purpose. It will subset data for subtypes B, C and CRF 02_AG, and collection date will be formated as decimal for tip dating analysis

Usage

organize_metadata_bySubtype(all_data_SN, all_data_CGR, code)

Arguments

all_data_SN	Object of class dataframe. This dataframe contains metadata for Senegal sequences
all_data_CGR	Object of class dataframe. This dataframe contains metadata for CGR sequences
code	If code = 1, it will return as a list dataframes for each subtype, and collection dates are formatted to decimal. If code = 2, it will return a list of dataframes for (1) all Senegal and CGR sequences and (2) samples in which collection date is missing.

Value

a list of dataframes

Examples

TO DO

thednainus/senegalHIVmodel documentation built on Oct. 14, 2024, 5:46 a.m.