show_sig_consensusmap: Show Signature Consensus Map

In sigminer: Extract, Analyze and Visualize Mutational Signatures for Genomic Variations

Show Signature Consensus Map

Description

This function is a wrapper of NMF::consensusmap().

Usage

show_sig_consensusmap(
  sig,
  main = "Consensus matrix",
  tracks = c("consensus:", "silhouette:"),
  lab_row = NA,
  lab_col = NA,
  ...
)

Arguments

sig	a Signature object obtained from sig_extract.
main	Main title as a character string or a grob.
tracks	Special additional annotation tracks to highlight associations between basis components and sample clusters: basis matches each row (resp. column) to the most contributing basis component in basismap (resp. coefmap). In basismap (resp. coefmap), adding a track ':basis' to annCol (resp. annRow) makes the column (resp. row) corresponding to the component being also highlited using the mathcing colours.
lab_row	labels for the rows.
lab_col	labels for the columns.
...	other parameters passing to NMF::consensusmap().

Value

nothing

sigminer documentation built on May 29, 2024, 3:11 a.m.