tcplPlotM4ID: Plot fit summary plot by m4id

In tcpl: ToxCast Data Analysis Pipeline

Plot fit summary plot by m4id

Description

tcplPlotM4ID creates a summary plots for the given m4id(s) by loading the appropriate data from the tcpl databases and sending it to tcplPlotFits

Usage

tcplPlotM4ID(m4id, lvl = 4L)

Arguments

m4id	Integer, m4id(s) to plot
lvl	Integer, the level of data to plot

Details

A level 4 plot ('lvl' = 4) will plot the concentration series and the applicable curves, without an indication of the activity call or the winning model. Level 4 plots can be created without having done subsequent processing.

Level 5 plots include the level 4 information with the activity call and model selection. The winning model will be highlighted red in the side panel containing the summary statistics. Level 6 plots, in addition the all of the level 4 and 5 information, include the positive flag IDs. If the flag has an associated value, the value will be in parentheses following the flag ID. Level 7 plots in addition to all of the level 4, 5, and 6 information, include the AC50 confidence interval and hit percentage information from bootstrapping.

See Also

tcplPlotFits, tcplMakeAeidPlts

Examples

## Store the current config settings, so they can be reloaded at the end 
## of the examples
conf_store <- tcplConfList()
tcplConfExample()

tcplPlotM4ID(m4id = 18609966, lvl = 4) ## Create a level 4 plot
tcplPlotM4ID(m4id = 18609966, lvl = 5) ## Create a level 5 plot
tcplPlotM4ID(m4id = 18609966, lvl = 6) ## Create a level 6 plot

#' ## Reset configuration
options(conf_store)

tcpl documentation built on Oct. 7, 2023, 1:06 a.m.