FIRMAGene: FIRMAGene - differential splicing for Affymetrix Gene 1.0 ST
Version 0.9.8

Tools for the analysis of differential splicing for microarray data

AuthorMark Robinson <mrobinson@wehi.edu.au>
Date of publication2013-05-29 09:32:34
MaintainerMark Robinson <mrobinson@wehi.edu.au>
LicenseLGPL
Version0.9.8
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("FIRMAGene", repos="http://R-Forge.R-project.org")

Popular man pages

calcMeans: Calculates columnwise "means"
FIRMAGene: FIRMAGene - Finding Isoforms using Robust Multichip Analysis...
mufC: Calls the C code for the partial sum 'material unaccounted...
mufMax: Function to calculate MUF score of a vector
mufMaxPositions: Returns the maximum location of MUF score for specified...
plotDecompAroma: Plots the RMA decomposition
topSplices: Highlights the top differentially spliced genes
See all...

All man pages Function index File listing

Man pages

calcMeans: Calculates columnwise "means"
FIRMAGene: FIRMAGene - Finding Isoforms using Robust Multichip Analysis...
getDetails: Gathers details from biomaRt
mufC: Calls the C code for the partial sum 'material unaccounted...
mufColumns: Calculates the MUF statistic for each column of a matrix
mufMax: Function to calculate MUF score of a vector
mufMaxPositions: Returns the maximum location of MUF score for specified...
plotDecompAroma: Plots the RMA decomposition
topSplices: Highlights the top differentially spliced genes

Functions

FIRMAGene Man page Source code
First.lib Source code
calcMeans Man page Source code
fgFDR Source code
getDetails Man page
mufC Man page Source code
mufColumns Man page Source code
mufMax Man page Source code
mufMaxPositions Man page Source code
onLoad Source code
plotDecomp Source code
plotDecompAroma Man page
splitQuick Source code
topSplices Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/C_calls.R
R/FIRMAGene.R
R/calcMeans.R
R/fgFDR.R
R/getDetails.R
R/init.R
R/init_fns.R
R/muf.R
R/mufMaxPositions.R
R/plotDecomp.R
R/quickSplit.R
R/topSplices.R
inst
inst/doc
inst/doc/Sweave.sty
inst/doc/readme.txt
man
man/FIRMAGene.Rd
man/calcMeans.Rd
man/getDetails.Rd
man/mufC.Rd
man/mufColumns.Rd
man/mufMax.Rd
man/mufMaxPositions.Rd
man/plotDecompAroma.Rd
man/topSplices.Rd
src
src/FIRMAGene.h
src/init.c
src/mps.c
tests
tests/FIRMAGene-Tests.R
FIRMAGene documentation built on May 21, 2017, 3:28 a.m.

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