FIRMAGene: FIRMAGene - differential splicing for Affymetrix Gene 1.0 ST

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Tools for the analysis of differential splicing for microarray data

Author
Mark Robinson <mrobinson@wehi.edu.au>
Date of publication
2013-05-29 09:32:34
Maintainer
Mark Robinson <mrobinson@wehi.edu.au>
License
LGPL
Version
0.9.8

View on R-Forge

Man pages

calcMeans
Calculates columnwise "means"
FIRMAGene
FIRMAGene - Finding Isoforms using Robust Multichip Analysis...
getDetails
Gathers details from biomaRt
mufC
Calls the C code for the partial sum 'material unaccounted...
mufColumns
Calculates the MUF statistic for each column of a matrix
mufMax
Function to calculate MUF score of a vector
mufMaxPositions
Returns the maximum location of MUF score for specified...
plotDecompAroma
Plots the RMA decomposition
topSplices
Highlights the top differentially spliced genes

Files in this package

FIRMAGene/DESCRIPTION
FIRMAGene/NAMESPACE
FIRMAGene/R
FIRMAGene/R/C_calls.R
FIRMAGene/R/FIRMAGene.R
FIRMAGene/R/calcMeans.R
FIRMAGene/R/fgFDR.R
FIRMAGene/R/getDetails.R
FIRMAGene/R/init.R
FIRMAGene/R/init_fns.R
FIRMAGene/R/muf.R
FIRMAGene/R/mufMaxPositions.R
FIRMAGene/R/plotDecomp.R
FIRMAGene/R/quickSplit.R
FIRMAGene/R/topSplices.R
FIRMAGene/inst
FIRMAGene/inst/doc
FIRMAGene/inst/doc/Sweave.sty
FIRMAGene/inst/doc/readme.txt
FIRMAGene/man
FIRMAGene/man/FIRMAGene.Rd
FIRMAGene/man/calcMeans.Rd
FIRMAGene/man/getDetails.Rd
FIRMAGene/man/mufC.Rd
FIRMAGene/man/mufColumns.Rd
FIRMAGene/man/mufMax.Rd
FIRMAGene/man/mufMaxPositions.Rd
FIRMAGene/man/plotDecompAroma.Rd
FIRMAGene/man/topSplices.Rd
FIRMAGene/src
FIRMAGene/src/FIRMAGene.h
FIRMAGene/src/init.c
FIRMAGene/src/mps.c
FIRMAGene/tests
FIRMAGene/tests/FIRMAGene-Tests.R