plotDecompAroma: Plots the RMA decomposition

In FIRMAGene: FIRMAGene - differential splicing for Affymetrix Gene 1.0 ST

Description

Creates a 4-panel plot with

Usage

plotDecompAroma(plm, id = "7952953", col = "black", lwd = 1, vlines = NULL)

Arguments

plm	a ProbeLevelModel object
id	text identifier of the gene of interest
col	scalar or vector (of the same length as the number of samples) to use for line plot colours
lwd	scalar or vector (of the same length as the number of samples) to use for line plot widths
vlines	optional vector of x-values to plot vertical lines

Details

From the 'ProbeLevelModel' fit, the original data, the probe effects, chip effects and residuals are read and plotted.

Value

Called for the result, a plot.

Invisibly returns a list of all the data that is plotted.

Author(s)

Mark Robinson

Examples

## Not run.
## plotDecompAroma(plm, id = "7952953", col = "black", lwd = 1, vlines = NULL)

FIRMAGene documentation built on May 2, 2019, 5:55 p.m.