topSplices: Highlights the top differentially spliced genes

In FIRMAGene: FIRMAGene - differential splicing for Affymetrix Gene 1.0 ST

Description

Using the simulated null distribution, the top FIRMAGene (gene-sample/class) scores are retrieved.

Usage

topSplices(fgObj, n = 20, plm=NULL, cls=NULL)

Arguments

fgObj	an object output from 'FIRMAGene'
n	The number of top differentially spliced genes to display
plm	The corresponding RmaPlm object to gather probe, default NULL
cls	The corresponding group identifer that was used to build the object output from 'FIRMAGene'

Value

A table giving the gene identifier, sample (or class) and FIRMAGene score for the top 'n' genes. If plm and cls are specified (and these should match what was used as input to FIRMAGene), the probe numbers that start and end the maximum MUF score are retrieved.

Author(s)

Mark Robinson

See Also

FIRMAGene

Examples

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FIRMAGene documentation built on May 2, 2019, 5:55 p.m.