FSim: A package to search functionally similar genes
Version 0.1.6

The package can be used to search functionally similar genes by given a gene, a group of GO terms or a list of keywords.

AuthorQiang Hu
Date of publication2013-11-15 14:13:52
MaintainerQiang Hu <huqmail@gmail.com>
LicenseGPL
Version0.1.6
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("FSim", repos="http://R-Forge.R-project.org")

Getting started

Package overview

Popular man pages

an.Hs.egGO: an.Hs.egGO
calSim: Function to calculate similarity score
FSim-package: A package to search functionally similar genes
LC: LC
Onto2LC: Function to calculate the Level Coefficients
ovreGO: Function to analyze over-represented GO terms for a giving...
SearchTerm: Function to search keywords for similar GO terms.
See all...

All man pages Function index File listing

Man pages

an.Hs.egGO: an.Hs.egGO
calSim: Function to calculate similarity score
FSim-package: A package to search functionally similar genes
g2go: Function to extract GO annotation and corresponding ancestor...
keyword: keyword
LC: LC
Onto2LC: Function to calculate the Level Coefficients
ovreGO: Function to analyze over-represented GO terms for a giving...
SearchGene: Function to search for functionally similar genes
SearchTerm: Function to search keywords for similar GO terms.

Functions

FSim Man page
FSim-package Man page
LC Man page
Onto2LC Man page Source code
SearchGene Man page Source code
SearchTerm Man page Source code
an.Hs.egGO Man page
buildGOgraph Source code
calSim Man page Source code
g2go Man page Source code
keyword Man page
ovreGO Man page Source code
t2ancestor Source code

Files

DESCRIPTION
NAMESPACE
R
R/LC.R
R/SearchTerm.R
R/calSim.R
R/ovreGO.R
build
build/vignette.rds
data
data/LC.RData
data/an.Hs.egGO.RData
data/datalist
data/keyword.RData
inst
inst/doc
inst/doc/FSim.R
inst/doc/FSim.pdf
man
man/FSim-package.Rd
man/LC.Rd
man/Onto2LC.Rd
man/SearchGene.Rd
man/SearchTerm.Rd
man/an.Hs.egGO.Rd
man/calSim.Rd
man/g2go.Rd
man/keyword.Rd
man/ovreGO.Rd
FSim documentation built on May 21, 2017, 3:55 a.m.

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