FSim: A package to search functionally similar genes

The package can be used to search functionally similar genes by given a gene, a group of GO terms or a list of keywords.

Author
Qiang Hu
Date of publication
2013-11-15 14:13:52
Maintainer
Qiang Hu <huqmail@gmail.com>
License
GPL
Version
0.1.6

View on R-Forge

Man pages

an.Hs.egGO
an.Hs.egGO
calSim
Function to calculate similarity score
FSim-package
A package to search functionally similar genes
g2go
Function to extract GO annotation and corresponding ancestor...
keyword
keyword
LC
LC
Onto2LC
Function to calculate the Level Coefficients
ovreGO
Function to analyze over-represented GO terms for a giving...
SearchGene
Function to search for functionally similar genes
SearchTerm
Function to search keywords for similar GO terms.

Files in this package

FSim/DESCRIPTION
FSim/NAMESPACE
FSim/R
FSim/R/LC.R
FSim/R/SearchTerm.R
FSim/R/calSim.R
FSim/R/ovreGO.R
FSim/build
FSim/build/vignette.rds
FSim/data
FSim/data/LC.RData
FSim/data/an.Hs.egGO.RData
FSim/data/datalist
FSim/data/keyword.RData
FSim/inst
FSim/inst/doc
FSim/inst/doc/FSim.R
FSim/inst/doc/FSim.pdf
FSim/man
FSim/man/FSim-package.Rd
FSim/man/LC.Rd
FSim/man/Onto2LC.Rd
FSim/man/SearchGene.Rd
FSim/man/SearchTerm.Rd
FSim/man/an.Hs.egGO.Rd
FSim/man/calSim.Rd
FSim/man/g2go.Rd
FSim/man/keyword.Rd
FSim/man/ovreGO.Rd